Insertion junction: CLIP2.042562_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.042562
Chromosome:plastome
Location:195445
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802335 rpoC1,ChreCp069,2717049 (1 of 2) K03046 - DNA-directed RNA polymerase subunit beta' (rpoC); RNA polymerase beta' chain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GATTTACATTTAAAAGATTATGTGTTTTTGAATAGATTTCCATATAATTG
Internal bar code:GACAATACGCAAGGCACTTAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:53
LEAP-Seq percent confirming:50.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:2

Suggested primers for confirmation by PCR

Suggested primer 1:ATGGTGACCAAATGGCCGTA
Suggested primer 2:CTCCCATGCTTTGCCCCTTA