Insertion junction: CLIP2.042635_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.042635
Chromosome:chromosome 7
Location:406422
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g314866 EBM4 (1 of 9) 3.2.1.78 - Mannan endo-1,4-beta-mannosidase / Endo-1,4-mannanase; Mannan endo-1%252C4-beta-mannosidase intron
Cre07.g314900 HEL34 (1 of 1) PTHR24031:SF301 - ATP-DEPENDENT RNA HELICASE DDX18; DEAD/DEAH box helicase 3'UTR_intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGCCCGTCTGTCCCCGCGCACTCGGGCGCTATTGCATCGAGCAAACGCA
Internal bar code:TACAGACTTGGACACCAAGCTG

Confirmation - LEAP-Seq

LEAP-Seq distance:457
LEAP-Seq percent confirming:71.4286
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:TGCCTGCATTCCTAGTCGTG
Suggested primer 2:TGGGGAGCAGTTAACGGAAC