Insertion junction: CLIP2.042706_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.042706
Chromosome:chromosome 6
Location:3120390
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g275450 (1 of 1) PF00069//PF13855 - Protein kinase domain (Pkinase) // Leucine rich repeat (LRR_8) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCGACGACGTCCGCTTCCCGCCGCGCCGGGCGCTGGGGCTGGCCGCGGC
Internal bar code:ACTAGGGAGTACCGGTGATACC

Confirmation - LEAP-Seq

LEAP-Seq distance:951
LEAP-Seq percent confirming:42.8571
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:AGGCTTAGCTCATGTGCGTT
Suggested primer 2:AGGGAGAGGGAGACATGCAT