Insertion junction: CLIP2.042720_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.042720
Chromosome:chromosome 11
Location:1991510
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g467770 PGK1 Phosphoglycerate kinase, chloroplastic; (1 of 1) 2.7.2.3 - Phosphoglycerate kinase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACGTGCGGGCAGGGGACACCCAACACCACCCACGCCACGCCCACCCCCC
Internal bar code:CGTGTAACGTGATAGTAGCATG

Confirmation - LEAP-Seq

LEAP-Seq distance:179
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:1

Suggested primers for confirmation by PCR

Suggested primer 1:GACTCGCTCTACCTCCATGC
Suggested primer 2:TCTTGTCGTCCTCAACCAGC