Insertion junction: CLIP2.042767_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.042767
Chromosome:chromosome 16
Location:2693203
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g661700 (1 of 1) PTHR31775//PTHR31775:SF2 - FAMILY NOT NAMED // REMORIN CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTACGAGGAGGACGTGTACGCCGGCATCATGAAGGGAGGGTTCGACTCTG
Internal bar code:ATCGTCTACACGTAGTTGTTGA

Confirmation - LEAP-Seq

LEAP-Seq distance:2632
LEAP-Seq percent confirming:67.6056
LEAP-Seq n confirming:48
LEAP-Seq n nonconfirming:23
LEAP-Seq n unique pos:71

Suggested primers for confirmation by PCR

Suggested primer 1:ACCACACAACTCACTGCCAA
Suggested primer 2:CAACAAAGGGGCTTGTCGTG