Insertion junction: CLIP2.042783_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.042783
Chromosome:chromosome 12
Location:1800416
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g512750 TEF20 Notchless-like protein; (1 of 1) PTHR22847//PTHR22847:SF50 - WD40 REPEAT PROTEIN // SUBFAMILY NOT NAMED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTTTTGTGTCAAAACGAAAGCAGGCGAGTAGAGAGCTGCTGGCGCGCAC
Internal bar code:TCTACTACATACACGGATAGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:755
LEAP-Seq percent confirming:91.6667
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:CTTTTCACGCCCTCTCCCTT
Suggested primer 2:TCAGGTGACGGTGTCCAATG