Insertion junction: CLIP2.042802_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.042802
Chromosome:chromosome 16
Location:2980620
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g663700 (1 of 1) K03871 - von Hippel-Lindau disease tumor supressor (VHL) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGACGGGGTCGGGGTCGCCACACGCAATGGATGACGTGTATGCAGATGAG
Internal bar code:TGAGGCGATGGCATGCGCTTAT

Confirmation - LEAP-Seq

LEAP-Seq distance:320
LEAP-Seq percent confirming:83.3333
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:AAGTATGGACGCAAGCTGCT
Suggested primer 2:GTGGACCGTTGACACGTTTG