Insertion junction: CLIP2.042843_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.042843
Chromosome:chromosome 16
Location:6229805
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00152018

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTACAGTAGAGCTGGCAAGCAACAGGCCCAACACACTCAGTCAGCCATAC
Internal bar code:TTCAGTCAGAGTCTAGGGGGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:3620
LEAP-Seq percent confirming:89.0909
LEAP-Seq n confirming:49
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:55

Suggested primers for confirmation by PCR

Suggested primer 1:GCGTTCATTCATCGGACACG
Suggested primer 2:TATTAGGTTACGCGGCGGAC