Insertion junction: CLIP2.042856_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.042856
Chromosome:chromosome 12
Location:3442910
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g497500 SNE7 (1 of 8) PTHR10366:SF411 - HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173 PROTEIN; Cinnamoyl-CoA reductase/flavanone 4-reductase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGTACATCACTGTGGCCAAGTCGCTGTGGGTGGCGGACTTTGCCCGCGC
Internal bar code:GCCGTTTTGGCTGTTTGTACTT

Confirmation - LEAP-Seq

LEAP-Seq distance:909
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:TCCATTCCCATTCCCACAGC
Suggested primer 2:ACCTCATCACCCCTCCTACC