Insertion junction: CLIP2.042871_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.042871
Chromosome:chromosome 6
Location:3840521
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g278179 (1 of 1) PTHR18937//PTHR18937:SF244 - STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER // SUBFAMILY NOT NAMED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGAGACCGAGGTGGTGGAGGCGGCGCCGCTGAGGGCGTTGGGCCGGCCGC
Internal bar code:GAATGAATGCAAGTGCGCGGAT

Confirmation - LEAP-Seq

LEAP-Seq distance:2987
LEAP-Seq percent confirming:69.5652
LEAP-Seq n confirming:48
LEAP-Seq n nonconfirming:21
LEAP-Seq n unique pos:69

Suggested primers for confirmation by PCR

Suggested primer 1:CTATCGTCTGGACCTTCGCC
Suggested primer 2:GGAAGCTGGCTCCTGATGTT