Insertion junction: CLIP2.042880_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.042880
Chromosome:chromosome 16
Location:6348134
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g675700 BLZ21 (1 of 2) IPR000104//IPR004827 - Antifreeze protein, type I // Basic-leucine zipper domain; bZIP transcription factor intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCACACACACCCTCGAGAACAAGAACCGTGGTTCCGCTGCCGGGTGTCGT
Internal bar code:TTAATTTCGGAGTACGGTCTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:294
LEAP-Seq percent confirming:47.0588
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:CTCACTTGCTGCACACACAC
Suggested primer 2:CGCTTGCTTGTCGTCAAACA