Insertion junction: CLIP2.042911_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.042911
Chromosome:chromosome 2
Location:5936846
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g117900 HEL11,MTR4 DEAD/DEAH box family ATP dependent helicase; (1 of 2) K12598 - ATP-dependent RNA helicase DOB1 (MTR4, SKIV2L2) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCACACACCGGTGCACCAACAGCGCACAAGGTGCGCAGTACACCCCGGTC
Internal bar code:AAACTGGAGTTTATGGCTTAGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1016
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:CATGGTGGTCACGTTCTCCA
Suggested primer 2:GTGGGCAGACATTAGGCAGT