Insertion junction: CLIP2.042940_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.042940
Chromosome:chromosome 6
Location:7453523
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g300600 (1 of 19) PTHR31251:SF1 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 10-RELATED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTCATGCTTGGCACCGGCCTGACAAGCTGACATTTTCACCCGTCTTGGG
Internal bar code:CTTTCGAGCGATAGCTTTGCCA

Confirmation - LEAP-Seq

LEAP-Seq distance:579
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:GGAATCGCATGCGGAGAGTA
Suggested primer 2:GTTGGCGTTGATCCGTATGC