Insertion junction: CLIP2.043039_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.043039
Chromosome:chromosome 3
Location:4282141
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g174100 (1 of 1) IPR013122//IPR015928 - Polycystin cation channel, PKD1/PKD2 // Aconitase/3-isopropylmalate dehydratase, swivel intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCTGACAGAGGGTGGCGGGGGCGGGGGCGCTGCTGGCGAGCCGAGGGCT
Internal bar code:TGCTTTTCCGCTCGTTATATGT

Confirmation - LEAP-Seq

LEAP-Seq distance:569
LEAP-Seq percent confirming:12.5
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:14
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:CACCCAGCCTAAAGCCTCC
Suggested primer 2:GCGTCGGACGTATGATGAGT