Insertion junction: CLIP2.043347_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.043347
Chromosome:chromosome 3
Location:5086599
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g180300 SIR3 (1 of 1) 1.8.1.2 - Assimilatory sulfite reductase (NADPH) / Sulfite reductase (NADPH); Sulfite reductase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTACTAAGTGCGGTAAACGTGAGCAGCGGAGAGGAGGAGGCGTACGATT
Internal bar code:TTCGACGAGAAGGTATTAGGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:55
LEAP-Seq percent confirming:12.5
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:GTTGAGCAACATGCCAAGCA
Suggested primer 2:CAGGTGTGCGTTGTGAGTTG