Insertion junction: CLIP2.043374_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.043374
Chromosome:chromosome 9
Location:680185
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g800988 CDS
lncRNA_TCONS_00140925 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACTTTACGCAATGTCGCTGCACTAGCCGCACGAGCGTAGAATCGCCACAT
Internal bar code:AATATTTGTTTTCATAGTTGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1487
LEAP-Seq percent confirming:96.0
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:CGGGAGAAGAAGTGCTGTGT
Suggested primer 2:CAGCAGCAACCCAGTTCAAC