Insertion junction: CLIP2.043412_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.043412
Chromosome:chromosome 4
Location:2335161
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g220900 GT90-4,GT90F4 (1 of 52) PF05686 - Glycosyl transferase family 90 (Glyco_transf_90); GT90 family protein 4 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTTCTACAGGTGGGTGGGACGGTGATGTCAGATCAATGCCGCCAGTTTCT
Internal bar code:TATGGCTTCACTCAAGCGTTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:2735
LEAP-Seq percent confirming:92.8571
LEAP-Seq n confirming:78
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:84

Suggested primers for confirmation by PCR

Suggested primer 1:CACCGTTTCTTGCCCTTGTG
Suggested primer 2:CGCAGCGATTTGAATCCCAG