Insertion junction: CLIP2.043447_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.043447
Chromosome:chromosome 10
Location:3649228
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g801149 (1 of 73) IPR000477//IPR005135 - Reverse transcriptase domain // Endonuclease/exonuclease/phosphatase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGGGGCCTGCACAGGTGATGCAAGCGTCAGCCGCAAGTTCAACTTCGGT
Internal bar code:CCTAGCATTTTTGCTGGTGCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:2119
LEAP-Seq percent confirming:33.3333
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:3

Suggested primers for confirmation by PCR

Suggested primer 1:CGCACATCTTCCTGGAGTGT
Suggested primer 2:AAATCCCGTGGCCAGTACAG