Insertion junction: CLIP2.043479_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.043479
Chromosome:chromosome 9
Location:5478445
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g408851 (1 of 2) 3.4.11.9 - Xaa-Pro aminopeptidase / X-Pro aminopeptidase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGTGTGTGTGGCGGTGTATCGGTGTGGGGGTGTATCGGTGTGGAGGGAC
Internal bar code:TTACAAAACTGCCGGTTATTCA

Confirmation - LEAP-Seq

LEAP-Seq distance:292
LEAP-Seq percent confirming:33.3333
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:12
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:ACACACACAGGCTCACACAA
Suggested primer 2:ACCTGTGTGTGTGTGTGTGT