Insertion junction: CLIP2.043487_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.043487
Chromosome:chromosome 14
Location:2636984
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre14.g625350 MAE17 MATE efflux family protein; (1 of 3) PTHR11206:SF95 - MULTI ANTIMICROBIAL EXTRUSION FAMILY PROTEIN intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCCGAGCCCAAAGATATAGTCCCAGTAGCCAAGGAATCGCCGCCCAACC
Internal bar code:ACCCGAGATTGATTAAGTGCCA

Confirmation - LEAP-Seq

LEAP-Seq distance:660
LEAP-Seq percent confirming:96.1538
LEAP-Seq n confirming:25
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:TGCATTCCGCTTCACAGCTA
Suggested primer 2:TACTGGTTTTGCGATCGGCT