Insertion junction: CLIP2.043531_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.043531
Chromosome:chromosome 16
Location:4559788
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g671250 (1 of 3) K12041 - solute carrier family 9 (sodium/hydrogen exchanger), member 6/7 (SLC9A6_7, NHE6_7) 3'UTR
Cre16.g671300 (1 of 3) K12041 - solute carrier family 9 (sodium/hydrogen exchanger), member 6/7 (SLC9A6_7, NHE6_7) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTATGTCGAGGTCGTGTGGGAGGTACTTCTGGATGTCTTGACGCGTGTA
Internal bar code:GTTGTGTATTGGGATTTGGCTG

Confirmation - LEAP-Seq

LEAP-Seq distance:397
LEAP-Seq percent confirming:94.4444
LEAP-Seq n confirming:34
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:36

Suggested primers for confirmation by PCR

Suggested primer 1:GGGGGTTTGCATTGCGAAAT
Suggested primer 2:CGACCGACCCTGAACTTTGA