Insertion junction: CLIP2.043560_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.043560
Chromosome:chromosome 3
Location:1777344
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g153850 (1 of 10) PTHR31867:SF1 - EXPANSIN-A1-RELATED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCGTCTGGCTTCAAGCCCCGCTGCACTGGATGCGACGACTACTATGTGAG
Internal bar code:GGTCCCATTAGGAGTTTGCATA

Confirmation - LEAP-Seq

LEAP-Seq distance:1017
LEAP-Seq percent confirming:92.3077
LEAP-Seq n confirming:36
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:39

Suggested primers for confirmation by PCR

Suggested primer 1:CATGACATGATGTGCAGGCG
Suggested primer 2:ACTGCACTCATACTTGGCCC