Insertion junction: CLIP2.043583_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.043583
Chromosome:chromosome 7
Location:3574513
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g336700 (1 of 781) IPR000104 - Antifreeze protein, type I intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GATCATGACGGAAGGAGGCGCCCGAGAGCGGACCCATTCTGGGCATGCCA
Internal bar code:ACTATGTTTGGTTCGTCATGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:390
LEAP-Seq percent confirming:33.3333
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:CCCAGTTGCCGTTTTGAAGG
Suggested primer 2:CCACAACCTGCCTCTCAGAG