Insertion junction: CLIP2.043795_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.043795
Chromosome:chromosome 13
Location:439588
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g564850 (1 of 1) PTHR31651:SF3 - AUXIN EFFLUX CARRIER FAMILY PROTEIN 3'UTR
Cre13.g801516 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACTTCTGCCACTGCAACGATCAAGTACATGAATGCTGAACTGAGTAATG
Internal bar code:CGTTAGGTTCCGAGGGTCTGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1602
LEAP-Seq percent confirming:95.3846
LEAP-Seq n confirming:62
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:65

Suggested primers for confirmation by PCR

Suggested primer 1:GGGCTATAACCGACCGTCAG
Suggested primer 2:CGCCAGTTCCGATTTTAGCG