Insertion junction: CLIP2.043795_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.043795
Chromosome:chromosome 13
Location:439604
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g564850 (1 of 1) PTHR31651:SF3 - AUXIN EFFLUX CARRIER FAMILY PROTEIN 3'UTR
Cre13.g801516 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCAGTGGCAGAAGTGCATGGGGCACGACTGCTTCATGGCGCCGAGGGCC
Internal bar code:ATTCTTCCCGGTCCGCAACGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:4281
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:30
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:CGCCAGTTCCGATTTTAGCG
Suggested primer 2:GGGCTATAACCGACCGTCAG