Insertion junction: CLIP2.043824_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.043824
Chromosome:chromosome 10
Location:3783437
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g801161 (1 of 30) PF00078//PF03372 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Endonuclease/Exonuclease/phosphatase family (Exo_endo_phos) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGATGATTCCTCAAAAAAAAAAAGGTTTGCGCACCTGACGGGCCCTTGCC
Internal bar code:CGTTCGTGTAAGCCCAAAAATT

Confirmation - LEAP-Seq

LEAP-Seq distance:986
LEAP-Seq percent confirming:63.6364
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:AGTCTTAGCTTGCAGGGCAG
Suggested primer 2:TACCTCCAAGGCCTGATCGA