Insertion junction: CLIP2.043824_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.043824
Chromosome:chromosome 10
Location:3783439
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g801161 (1 of 30) PF00078//PF03372 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Endonuclease/Exonuclease/phosphatase family (Exo_endo_phos) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACAAGGTTGAACAGGGGCAGACGCGCTGCCCCCCCACTGCCCGAAAGCAG
Internal bar code:CGTTCGTGTAAGCCCAAAAATT

Confirmation - LEAP-Seq

LEAP-Seq distance:158
LEAP-Seq percent confirming:40.0
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:15
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:TACCTCCAAGGCCTGATCGA
Suggested primer 2:AGTCTTAGCTTGCAGGGCAG