Insertion junction: CLIP2.043825_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.043825
Chromosome:chromosome 9
Location:2406370
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g393700 MMP3 Matrix metalloproteinase; (1 of 2) IPR016517 - Peptidase M11, autolysin CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGGCAGTCGCCGTCCTCATTGTCCGCGGCGCCATCGCAGTCGTTGTCAA
Internal bar code:ATAGAGCGTCTATGGGTTGAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:859
LEAP-Seq percent confirming:40.5405
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:22
LEAP-Seq n unique pos:37

Suggested primers for confirmation by PCR

Suggested primer 1:CGCGCGATGACAACATGATT
Suggested primer 2:GCGTACGGCAAACATGCTAG