Insertion junction: CLIP2.043865_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.043865
Chromosome:chromosome 17
Location:5758093
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g741000 (1 of 1) K13249 - translocon-associated protein subunit alpha (SSR1) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGCCGTCTCTGTCGTCCTCTTAGAATGGGGCTCTTCGGGCCCTTCCGGC
Internal bar code:TACTTACCGGGTGTTATATATG

Confirmation - LEAP-Seq

LEAP-Seq distance:2549
LEAP-Seq percent confirming:78.125
LEAP-Seq n confirming:25
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:32

Suggested primers for confirmation by PCR

Suggested primer 1:GTGGAGTACACCTTCCTGCC
Suggested primer 2:GACCTGCACACACCTACGAA