Insertion junction: CLIP2.043890_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.043890
Chromosome:plastome
Location:117579
Confidence (%):63
Locus systematic id Locus common name Defline Feature
intergenic

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTAAAGAAAAAATCTAAAAGCCCTGATGGTTGTCTCTTGCGGGTACCACC
Internal bar code:TTAGGAGGTTAACGTTTGAGCT

Confirmation - LEAP-Seq

LEAP-Seq distance:91
LEAP-Seq percent confirming:10.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:AAGTGCCTTACCCAACTGCA
Suggested primer 2:CAAGGTTTGTCGTGCAGCTC