Insertion junction: CLIP2.043981_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.043981
Chromosome:chromosome 16
Location:6450406
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00152270

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTCTGGTCTTGGAGCTTCCCATACAACCTGTGTGCGCGTACAATTTCAGC
Internal bar code:CCTTGCGGTAATTGTCTGGCGA

Confirmation - LEAP-Seq

LEAP-Seq distance:3377
LEAP-Seq percent confirming:80.5556
LEAP-Seq n confirming:29
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:36

Suggested primers for confirmation by PCR

Suggested primer 1:CGCAGCATTTGTTGAGCACT
Suggested primer 2:TCGCTGAGGTCAACATGCAT