Insertion junction: CLIP2.044023_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.044023
Chromosome:chromosome 4
Location:1882923
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g218200 (1 of 58) PTHR12393//PTHR12393:SF6 - SPHINGOMYELIN PHOSPHODIESTERASE RELATED // SPHINGOMYELIN PHOSPHODIESTERASE 2 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCGGCGGACAGCGGCACACCCTGCTGGGCCGCCAAAATGGACTTCTTGCT
Internal bar code:AGCGCACCCGTAGGTAGTACAT

Confirmation - LEAP-Seq

LEAP-Seq distance:2163
LEAP-Seq percent confirming:77.5
LEAP-Seq n confirming:62
LEAP-Seq n nonconfirming:18
LEAP-Seq n unique pos:80

Suggested primers for confirmation by PCR

Suggested primer 1:TTGACAGCATTGTGTGTGCG
Suggested primer 2:CTGTTAGAGACTGTGGCGGG