Insertion junction: CLIP2.044098_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.044098
Chromosome:chromosome 16
Location:5789434
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g680200 (1 of 1) PTHR31419//PTHR31419:SF1 - FAMILY NOT NAMED // AUXIN EFFLUX CARRIER FAMILY PROTEIN intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGTCTGGGCTTCAGGACATGCTTCTCACCACTACATGTGCTGCCGTACG
Internal bar code:TAAGCGCTTGTTTGTCCACCAC

Confirmation - LEAP-Seq

LEAP-Seq distance:773
LEAP-Seq percent confirming:5.88235
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:16
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:ACAGCTGCTGTTCATCCTCC
Suggested primer 2:AAGGGACAGTCCGACCAAAC