Insertion junction: CLIP2.044238_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.044238
Chromosome:chromosome 3
Location:8618966
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g210401 (1 of 1) PTHR14614//PTHR14614:SF15 - HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN // SUBFAMILY NOT NAMED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGTCTTTTGCCGACTATCCTACTACACGGAGGCTGCATGCGTATCCACG
Internal bar code:AGTTAGGAAGCTGCCCGAACTA

Confirmation - LEAP-Seq

LEAP-Seq distance:1090
LEAP-Seq percent confirming:92.0
LEAP-Seq n confirming:23
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:ACTTAGTGGGCGGGATTTGG
Suggested primer 2:GATTGAGCCACGAGGGAACA