Insertion junction: CLIP2.044313_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.044313
Chromosome:chromosome 13
Location:2444509
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g579598 SSS3B,SSS3 (1 of 2) PTHR12526//PTHR12526:SF341 - GLYCOSYLTRANSFERASE // SUBFAMILY NOT NAMED; Soluble starch synthase III intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTAAGAAGTGAAGGCGCAGTCAGGCAGGAGGGCTGGAAGCCAGCGCAGG
Internal bar code:CAACTGCTGAGCCCTAAGGATC

Confirmation - LEAP-Seq

LEAP-Seq distance:360
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:21
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:CTACCCAACCACACAGCCAT
Suggested primer 2:CCCCGCACCTGTATCTTGTT