Insertion junction: CLIP2.044360_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.044360
Chromosome:chromosome 3
Location:5020006
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g179860 (1 of 1) 2.1.1.203 - tRNA (cytosine(34)-C(5))-methyltransferase; tRNA-(m5C) methyltransferase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATCTGCCGCGGAATGATCAGGCCACAGTATCAAACACAATAGGCACGTTG
Internal bar code:CGGATGTTAGCAAAAGTGAGCC

Confirmation - LEAP-Seq

LEAP-Seq distance:1240
LEAP-Seq percent confirming:96.875
LEAP-Seq n confirming:31
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:32

Suggested primers for confirmation by PCR

Suggested primer 1:TGACGTGTCTCATCAGTGCC
Suggested primer 2:TGCTTCTTTTTCGCAACCCG