Insertion junction: CLIP2.044479_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.044479
Chromosome:chromosome 5
Location:2830317
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g241250 (1 of 1) IPR000104//IPR000253//IPR001357 - Antifreeze protein, type I // Forkhead-associated (FHA) domain // BRCT domain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCAACGACGACGATGCCCGGGAGCGGGAGTGCCGGCATCCCGCTGGCGGT
Internal bar code:CTTGCGTCTGGTAGTGTATGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:599
LEAP-Seq percent confirming:88.2353
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:GTGAACTCCTGTACCCGAGC
Suggested primer 2:CGATGACGTGGAGGGAGATG