Insertion junction: CLIP2.044750_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.044750
Chromosome:chromosome 1
Location:73748
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00247596

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATAGGGTGCAGCTGACGCCCGTACCCCAAGCAGACAGCAAACAGTTTGCA
Internal bar code:TCCATATTAGGTTCAGCAGAGT

Confirmation - LEAP-Seq

LEAP-Seq distance:360
LEAP-Seq percent confirming:18.75
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:AGATGCGTCCGATGGTGATC
Suggested primer 2:GTGTTGTCTCGCGCAACTTT