Insertion junction: CLIP2.044790_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.044790
Chromosome:chromosome 9
Location:1230121
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g400850 CTL4 (1 of 1) PTHR10877//PTHR10877:SF139 - POLYCYSTIN-RELATED // SUBFAMILY NOT NAMED; carbohydrate-binding protein CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCGCAGACCGATCCACGCGTCATACACGTTTGCAACCTGCCGGGGGGCGT
Internal bar code:TACTCCTCTGTTTGCTTAAGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1173
LEAP-Seq percent confirming:93.75
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:GTACAACACCATCGGCTCCA
Suggested primer 2:AGAAAGCTCTGCATCCCCAC