Insertion junction: CLIP2.044844_4

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.044844
Chromosome:chromosome 13
Location:3762097
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g588736 (1 of 10) IPR000104//IPR001810 - Antifreeze protein, type I // F-box domain 5'UTR
Cre13.g588750 (1 of 14) PF04577 - Protein of unknown function (DUF563) (DUF563) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGAAGTTGTTGCTTTAGCTTTGCTGTGCCCCAGCAGAGGGCCCCATCTC
Internal bar code:AAACATCCATGTCGTGGTCGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:956
LEAP-Seq percent confirming:83.7838
LEAP-Seq n confirming:31
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:37

Suggested primers for confirmation by PCR

Suggested primer 1:TCCTCCCTGCCTGCTTATCT
Suggested primer 2:AAGGATCTGTTGCTGCTGCT