Insertion junction: CLIP2.044856_3

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.044856
Chromosome:chromosome 9
Location:4545038
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g401145 (1 of 2) 3.1.4.12 - Sphingomyelin phosphodiesterase / Neutral sphingomyelinase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGCTAGGGGTGCTCAAGGCAGGTGGCAGCGGCAAGGTGGGTGGTGCAAA
Internal bar code:AAGGGTAATTGGCTGAACCTCG

Confirmation - LEAP-Seq

LEAP-Seq distance:1161
LEAP-Seq percent confirming:84.6154
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:CGCTCTTCACGCAGCAATAC
Suggested primer 2:GTCTGTTTCCGTGATGGGGT