Insertion junction: CLIP2.044960_4

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.044960
Chromosome:chromosome 17
Location:1637677
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g707650 SNRK2L (1 of 4) PTHR24343//PTHR24343:SF167 - SERINE/THREONINE KINASE // SUBFAMILY NOT NAMED; snRK1 family in Chlamydomonas, subgroup 2 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCGCATGCTTGGTGCAGTATCTGATTGTTGCGATGCCGTGCGCCCAGGCA
Internal bar code:GAGACAATGTTGTTATGCTGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:2649
LEAP-Seq percent confirming:60.8696
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:CCAGCTCTGATACGCCTGAG
Suggested primer 2:CATACCCCAGCACCACCAAT