Insertion junction: CLIP2.045048_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.045048
Chromosome:chromosome 7
Location:5602431
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g352250 HEL42 (1 of 2) K14780 - ATP-dependent RNA helicase DHX37/DHR1 [EC:3.6.4.13] (DHX37, DHR1); DEAD/DEAH box helicase intron
Cre07.g352251 (1 of 1) PTHR18934//PTHR18934:SF99 - ATP-DEPENDENT RNA HELICASE // ATP-DEPENDENT RNA HELICASE DHX37-RELATED 3'UTR_intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCAAGGCAGGTAGGGTTTTAAGTCCGCCGCATGCGCGCGCTACAGTATG
Internal bar code:GTTATGAGAAACTTGGATGAA

Confirmation - LEAP-Seq

LEAP-Seq distance:1184
LEAP-Seq percent confirming:82.7586
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:TCCCTTCATTCCCACACTGC
Suggested primer 2:GCTGCTGCAGGCGTAATAAC