Insertion junction: CLIP2.045095_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.045095
Chromosome:chromosome 12
Location:1896842
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g511950 (1 of 1) IPR003591//IPR013210 - Leucine-rich repeat, typical subtype // Leucine-rich repeat-containing N-terminal, plant-type intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTGGGCCCAGCCCGGCGTGTTCACCTCCCTTTCCTTCCTGCGCCTGTCC
Internal bar code:TGGAGTAGGGTCTGTTTGTCGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1670
LEAP-Seq percent confirming:77.2727
LEAP-Seq n confirming:34
LEAP-Seq n nonconfirming:10
LEAP-Seq n unique pos:44

Suggested primers for confirmation by PCR

Suggested primer 1:GTGTCGCAAGGGAAGAGGAA
Suggested primer 2:CCTCTCCCCCACTATGGTGA