Insertion junction: CLIP2.045129_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.045129
Chromosome:chromosome 10
Location:2375560
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g434850 (1 of 14) IPR006626//IPR011050 - Parallel beta-helix repeat // Pectin lyase fold/virulence factor intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGAACTAGCCGCGCAGCGCTGGACTGACCGTGTCTGGCGTATGACCTTT
Internal bar code:TTTGTCCCCTTTGCCAGAGTCG

Confirmation - LEAP-Seq

LEAP-Seq distance:298
LEAP-Seq percent confirming:18.1818
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:GCTACTGTTGGTGTTGCTGC
Suggested primer 2:AGCAGCAATGTCACCGATGA