Insertion junction: CLIP2.045157_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.045157
Chromosome:chromosome 9
Location:5544566
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00156899

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGAGCCTTTCGGTCGGCATGCCGGGTGCCCGCGCAAGCGGCTGCTGCGA
Internal bar code:GGAATTAGTCGGTAGCCAGTAA

Confirmation - LEAP-Seq

LEAP-Seq distance:1292
LEAP-Seq percent confirming:91.6667
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:GCCTGGAAACCCTACACGAA
Suggested primer 2:CCAATGTAAGACGGCCAGGT