Insertion junction: CLIP2.045171_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.045171
Chromosome:chromosome 9
Location:2179235
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g395500 HEATR2,HTR2A,HEATR2A,DNAAF5 5-Hydroxytryptamine Receptor 2A; (1 of 3) IPR016024//IPR021133 - Armadillo-type fold // HEAT, type 2 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCTGCAGTGGTGGTGCTGGCGCCGGTGGTGGCAGCGTCTGCGACGGGCG
Internal bar code:GTTGTCCGGACTTGTTATGAAA

Confirmation - LEAP-Seq

LEAP-Seq distance:394
LEAP-Seq percent confirming:28.5714
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:TGGAGGTGAGGATGGGGTAG
Suggested primer 2:ATAGCGGAACCCCTCATTGC