Insertion junction: CLIP2.045202_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.045202
Chromosome:chromosome 1
Location:5580926
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g039750 PDF1B (1 of 1) PTHR10458//PTHR10458:SF2 - PEPTIDE DEFORMYLASE // PEPTIDE DEFORMYLASE 1B, CHLOROPLASTIC/MITOCHONDRIAL; Peptide deformylase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTCTGATTCTCAGGAGGAGCAAACTCTCGCGCTGTCTGCTTTAACTCTGG
Internal bar code:GCAACTGCGTAATCCTCATGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:165
LEAP-Seq percent confirming:26.087
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:17
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:TTAACCCTGTCCCATCGCAC
Suggested primer 2:GCTGCTGATTGCCTCATTCG