Insertion junction: CLIP2.045202_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.045202
Chromosome:chromosome 1
Location:5580930
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g039750 PDF1B (1 of 1) PTHR10458//PTHR10458:SF2 - PEPTIDE DEFORMYLASE // PEPTIDE DEFORMYLASE 1B, CHLOROPLASTIC/MITOCHONDRIAL; Peptide deformylase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAGGCATGCCGGCGTCGAAGAGGAGCGAAACGGAACGCCCCCCCTTCGGT
Internal bar code:AGAGCGCACATGCAGGTTCTAA

Confirmation - LEAP-Seq

LEAP-Seq distance:553
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:GCTGCTGATTGCCTCATTCG
Suggested primer 2:TTAACCCTGTCCCATCGCAC