Insertion junction: CLIP2.045251_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.045251
Chromosome:chromosome 4
Location:1232870
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g215150 SSS1B,SSS1,SSIb (1 of 1) IPR023159 - SO1590-like domain; Soluble starch synthase IB intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTGTCTCCCACCGCTCACCCGCCCGAACCTCCCCAACCTCCCTGCCACC
Internal bar code:TCCGGCTCGATCGGAGTTTTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:87
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:GACAAAGGTGTGCAGCAAGG
Suggested primer 2:ACGTGCAAGTGTAGAAGGGG